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1

Reimagining the research-practice relationship: policy recommendations for informatics-enabled evidence-generation across the US health system

Embi, Peter J, Richesson, Rachel, Tenenbaum, Jessica, Kannry, Joseph, Friedman, Charles, Sarkar, Indra Neil, Smith, Jeff

Journal:

Year:

2019

Language:

english

File:

PDF, 209 KB

english, 2019

2

[IEEE 2018 5th International Conference on Signal Processing and Integrated Networks (SPIN) - Noida (2018.2.22-2018.2.23)] 2018 5th International Conference on Signal Processing and Integrated Networks (SPIN) - A Semi-automated Fuzzy Multi-criteria Decision Support System for Radiological Diagnosis of Lung Cancer

Choudhury, Indra Neil, Aishwaryaprajna,, Ghosh, Arundhuti, Chatterjee, Saunak, Sarkar, Atasi, Basu, Souptik, Chatterjee, Jyotirmoy, Sadhu, Anup, Sarkar, Tandra, Poddar, Subhankar, Sengupta, Atanu, Ch

Year:

2018

Language:

english

File:

PDF, 535 KB

english, 2018

3

The phylogeny of rodent malaria parasites: Simultaneous analysis across three genomes

Susan L. Perkins, Indra Neil Sarkar, Richard Carter

Journal:

Infection, Genetics and Evolution

Year:

2007

Language:

english

File:

PDF, 765 KB

english, 2007

4

Translational bioinformatics: linking knowledge across biological and clinical realms: Figure 1

Sarkar, Indra Neil, Butte, Atul J, Lussier, Yves A, Tarczy-Hornoch, Peter, Ohno-Machado, Lucila

Journal:

Journal of the American Medical Informatics Association

Year:

2011

Language:

english

File:

PDF, 154 KB

english, 2011

5

Finding the patient in informatics

Sarkar, Indra Neil

Journal:

Year:

2018

Language:

english

File:

PDF, 97 KB

english, 2018

6

Real-Time Emergency Department Electronic Notifications Regarding High-Risk Patients: A Systematic Review

Kimmel, Hannah J., Brice, Yanick N., Trikalinos, Thomas A., Sarkar, Indra Neil, Ranney, Megan L.

Journal:

Telemedicine and e-Health

Year:

2018

Language:

english

File:

PDF, 500 KB

english, 2018

7

Today’s data for tomorrow’s knowledge

Sarkar, Indra Neil

Journal:

Year:

2019

File:

PDF, 96 KB

2019

8

Evaluation of family history information within clinical documents and adequacy of HL7 clinical statement and clinical genomics family history models for its representation: a case report

Melton, Genevieve B, Raman, Nandhini, Chen, Elizabeth S, Sarkar, Indra Neil, Pakhomov, Serguei, Madoff, Robert D

Journal:

Journal of the American Medical Informatics Association

Year:

2010

Language:

english

File:

PDF, 71 KB

english, 2010

9

caos software for use in character-based DNA barcoding

INDRA NEIL SARKAR, PAUL J. PLANET, ROB DESALLE

Journal:

Molecular Ecology Resources

Year:

2008

Language:

english

File:

PDF, 170 KB

english, 2008

10

Adapting simultaneous analysis phylogenomic techniques to study complex disease gene relationships

Romano, Joseph D., Tharp, William G., Sarkar, Indra Neil

Journal:

Journal of Biomedical Informatics

Year:

2015

Language:

english

File:

PDF, 3.49 MB

english, 2015

11

Structural network analysis of biological networks for assessment of potential disease model organisms

Nabhan, Ahmed Ragab, Sarkar, Indra Neil

Journal:

Journal of Biomedical Informatics

Year:

2014

Language:

english

File:

PDF, 1.31 MB

english, 2014

12

Identifying Barriers to Patient Acceptance of Active Surveillance: Content Analysis of Online Patient Communications

Mishra, Mark V., Bennett, Michele, Vincent, Armon, Lee, Olivia T., Lallas, Costas D., Trabulsi, Edouard J., Gomella, Leonard G., Dicker, Adam P., Showalter, Timothy N., Sarkar, Indra Neil

Journal:

Year:

2013

Language:

english

File:

PDF, 378 KB

english, 2013

13

Finding the patient in informatics

Sarkar, Indra Neil

Journal:

Year:

2018

File:

PDF, 97 KB

2018

14

Community abstracts: coming soon!

Sarkar, Indra Neil

Journal:

Year:

2019

Language:

english

File:

PDF, 95 KB

english, 2019

15

Curated multiple sequence alignment for the Adenomatous Polyposis Coli (APC) gene and accuracy of in silico pathogenicity predictions

Karabachev, Alexander D., Martini, Dylan J., Hermel, David J., Solcz, Dana, Richardson, Marcy E., Pesaran, Tina, Sarkar, Indra Neil, Greenblatt, Marc S., Bandapalli, Obul Reddy

Journal:

Year:

2020

File:

PDF, 1.61 MB

2020

16

Translating standards into practice: Experiences and lessons learned in biomedicine and health care

Elizabeth S. Chen, Genevieve B. Melton, Indra Neil Sarkar

Journal:

Journal of Biomedical Informatics

Year:

2012

Language:

english

File:

PDF, 157 KB

english, 2012

17

Developing new pathways into the biomedical informatics field: the AMIA High School Scholars Program

Unertl, Kim M, Finnell, John T, Sarkar, Indra Neil

Journal:

Journal of the American Medical Informatics Association

Year:

2016

Language:

english

File:

PDF, 206 KB

english, 2016

18

Prediction of Thermostability from Amino Acid Attributes by Combination of Clustering with Attribute Weighting: A New Vista in Engineering Enzymes

Ebrahimi, Mansour, Lakizadeh, Amir, Agha-Golzadeh, Parisa, Ebrahimie, Esmaeil, Ebrahimi, Mahdi, Sarkar, Indra Neil

Journal:

Year:

2011

Language:

english

File:

PDF, 242 KB

english, 2011

19

Solr-Plant: efficient extraction of plant names from text

Sharma, Vivekanand, Restrepo, Maria Isabel, Sarkar, Indra Neil

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 584 KB

english, 2019

20

Harnessing electronic data to inform health decisions

Sarkar, Indra Neil

Journal:

Year:

2019

Language:

english

File:

PDF, 95 KB

english, 2019

21

Phylogenetics in the modern era

Indra Neil Sarkar

Journal:

Journal of Biomedical Informatics

Year:

2006

Language:

english

File:

PDF, 117 KB

english, 2006

22

Exploring historical trends using taxonomic name metadata

Indra Neil Sarkar, Ryan Schenk, Catherine N Norton

Journal:

BMC Evolutionary Biology

Year:

2008

Language:

english

File:

PDF, 554 KB

english, 2008

23

Crossing the health IT chasm: considerations and policy recommendations to overcome current challenges and enable value-based care

Adler-Milstein, Julia, Embi, Peter J, Middleton, Blackford, Sarkar, Indra Neil, Smith, Jeff

Journal:

Journal of the American Medical Informatics Association

Year:

2017

Language:

english

File:

PDF, 164 KB

english, 2017

24

Experimentally Guided Computational Model Discovers Important Elements for Social Behavior in Myxobacteria

Hendrata, Melisa, Yang, Zhe, Lux, Renate, Shi, Wenyuan, Sarkar, Indra Neil

Journal:

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

25

Achieving A Certain Major Achievement During Uncertain Times

Sarkar, Indra Neil

Journal:

Year:

2020

File:

PDF, 97 KB

2020

26

Generation, Annotation and Analysis of First Large-Scale Expressed Sequence Tags from Developing Fiber of Gossypium barbadense L

Yuan, Daojun, Tu, Lili, Zhang, Xianlong, Sarkar, Indra Neil

Journal:

Year:

2011

Language:

english

File:

PDF, 1.07 MB

english, 2011

27

Selecting Essential Information for Biosurveillance—A Multi-Criteria Decision Analysis

Generous, Nicholas, Margevicius, Kristen J., Taylor-McCabe, Kirsten J., Brown, Mac, Daniel, W. Brent, Castro, Lauren, Hengartner, Andrea, Deshpande, Alina, Sarkar, Indra Neil

Journal:

Year:

2014

Language:

english

File:

PDF, 232 KB

english, 2014

28

#BlackLivesMatter

Sarkar, Indra Neil

Journal:

Year:

2020

File:

PDF, 97 KB

2020

29

cGMP-dependent protein kinase from Toxoplasma gondii: functional expression in E. coli and molecular characterization

Caitlin J McFarland, Christian K Nickl, Brent W Osborne, Indra Neil Sarkar, Wolfgang R Dostmann

Journal:

BMC Pharmacology

Year:

2011

Language:

english

File:

PDF, 142 KB

english, 2011

30

Selected proceedings of the 2009 Summit on Translational Bioinformatics

Yves A Lussier, Indra Neil Sarkar

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 164 KB

english, 2009

31

Methods in Biomedical Informatics || Introduction

Sarkar, Indra Neil

Year:

2014

Language:

english

File:

PDF, 294 KB

english, 2014

32

DNA Barcoding of Recently Diverged Species: Relative Performance of Matching Methods

van Velzen, Robin, Weitschek, Emanuel, Felici, Giovanni, Bakker, Freek T., Sarkar, Indra Neil

Journal:

Year:

2012

Language:

english

File:

PDF, 571 KB

english, 2012

33

A vector space model approach to identify genetically related diseases

Sarkar, Indra Neil

Journal:

Journal of the American Medical Informatics Association

Year:

2012

Language:

english

File:

PDF, 337 KB

english, 2012

34

Building the Informatics Infrastructure for Comparative Effectiveness Research (CER)

Lopez, Marianne Hamilton, Holve, Erin, Sarkar, Indra Neil, Segal, Courtney

Journal:

Year:

2012

Language:

english

File:

PDF, 170 KB

english, 2012

35

Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds

Sateriale, Adam, Bessoff, Kovi, Sarkar, Indra Neil, Huston, Christopher D

Journal:

Journal of the American Medical Informatics Association

Year:

2014

Language:

english

File:

PDF, 1.65 MB

english, 2014

36

Today’s data for tomorrow’s knowledge

Sarkar, Indra Neil

Journal:

Year:

2019

Language:

english

File:

PDF, 96 KB

english, 2019

37

Biomedical informatics and translational medicine

Indra Neil Sarkar

Journal:

Journal of Translational Medicine

Year:

2010

Language:

english

File:

PDF, 694 KB

english, 2010

38

Leveraging biodiversity knowledge for potential phyto-therapeutic applications

Sharma, Vivekanand, Sarkar, Indra Neil

Journal:

Journal of the American Medical Informatics Association

Year:

2013

Language:

english

File:

PDF, 632 KB

english, 2013

39

Enhancing phylogeography by improving geographical information from GenBank

Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez

Journal:

Journal of Biomedical Informatics

Year:

2011

Language:

english

File:

PDF, 163 KB

english, 2011

40

A new journal for sharing informatics innovations: introducing JAMIA Open

Sarkar, Indra Neil

Journal:

Year:

2018

Language:

english

File:

PDF, 107 KB

english, 2018

41

Machine Learning Offers Exciting Potential for Predicting Postprocedural Outcomes: A Framework for Developing Random Forest Models in IR

Sinha, Ishan, Aluthge, Dilum P., Chen, Elizabeth S., Sarkar, Indra Neil, Ahn, Sun Ho

Journal:

Journal of Vascular and Interventional Radiology

Year:

2020

File:

PDF, 985 KB

2020

42

Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics

Indra Neil Sarkar, Mary G Egan, Gloria Coruzzi, Ernest K Lee, Rob DeSalle

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 250 KB

english, 2008

43

Harnessing next-generation informatics for personalizing medicine: a report from AMIA’s 2014 Health Policy Invitational Meeting

Wiley, Laura K, Tarczy-Hornoch, Peter, Denny, Joshua C, Freimuth, Robert R, Overby, Casey L, Shah, Nigam, Martin, Ross D, Sarkar, Indra Neil

Journal:

Journal of the American Medical Informatics Association

Year:

2016

Language:

english

File:

PDF, 241 KB

english, 2016

44

At the Intersection of Public-health Informatics and Bioinformatics

Scotch, Matthew, Mei, Changjiang, Brandt, Cynthia, Sarkar, Indra Neil, Cheung, Kei

Journal:

Year:

2010

Language:

english

File:

PDF, 1.10 MB

english, 2010

45

Identifying Herbal Adverse Events From Spontaneous Reporting Systems Using Taxonomic Name Resolution Approach

Sharma, Vivekanand, Gelin, Luiz Fernando Fracassi, Sarkar, Indra Neil

Journal:

Bioinformatics and Biology Insights

Year:

2020

File:

PDF, 886 KB

2020

46

Genome-wide search for leech antiplatelet proteins in the non-blood-feeding leech Helobdella robusta (Rhyncobdellida: Glossiphoniidae) reveals evidence of secreted anticoagulants

Sebastian Kvist, Indra Neil Sarkar, Mark E. Siddall

Journal:

Invertebrate Biology

Year:

2011

Language:

english

File:

PDF, 272 KB

english, 2011

47

Methods in Biomedical Informatics || Putting Theory into Practice

Sarkar, Indra Neil

Year:

2014

Language:

english

File:

PDF, 208 KB

english, 2014

48

Evidence-Based Validation of Herbal Medicine || Challenges in Identification of Potential Phytotherapies from Contemporary Biomedical Literature

Sarkar, Indra Neil

Year:

2015

Language:

english

File:

PDF, 131 KB

english, 2015

49

Extracting Physician Group Intelligence from Electronic Health Records to Support Evidence Based Medicine

Weber, Griffin M., Kohane, Isaac S., Sarkar, Indra Neil

Journal:

Year:

2013

Language:

english

File:

PDF, 695 KB

english, 2013

50

MeSHing molecular sequences and clinical trials: A feasibility study

Elizabeth S. Chen, Indra Neil Sarkar

Journal:

Journal of Biomedical Informatics

Year:

2010

Language:

english

File:

PDF, 1.92 MB

english, 2010

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